Doç. Dr. Engin KOÇAK

1. Plasma metabolomic and lipidomic profiling reveals distinct molecular signatures and time-dependent remodeling in ulcerative colitis

Bilican G., Noor N. M., Haas S. L., Petrousis G., KİRMAN D., Moral K., et al.

BMC Gastroenterology , cilt.26, sa.1, 2026 (SCI-Expanded, Scopus)

2. Hepatic and metabolic effects of SGLT2 inhibitors in type 2 diabetes and MASLD assessed by metabolomic and lipidomic analysis

Moral K., KOÇAK E., Kablan S. E., NEMUTLU E., ŞENDUR H. N., CERİT M. N., et al.

Scientific Reports , cilt.16, sa.1, 2026 (SCI-Expanded, Scopus)

3. Plasma Lipidomic Remodeling in Behçet’s Disease Reveals Alterations Associated with Vascular Involvement

KOÇAK E., YÜCEL Ç., Kablan S. E., SERTOĞLU E., ÖZGÜRTAŞ T., NEMUTLU E., et al.

Metabolites , cilt.16, sa.6, 2026 (SCI-Expanded, Scopus)

4. A Biomimetic Electrochemical Approach for Chlorogenic Acid Detection in Herbal Supplements and Plant Extracts Using Molecular Imprinting Technology

YAYLA Ş., ÇETİNKAYA A., KOÇAK E., NEMUTLU E., HÜRKUL M. M., ÖZKAN S. A.

ACS Omega , cilt.11, sa.19, ss.28762-28774, 2026 (SCI-Expanded, Scopus)

5. CHROMATOGRAPHIC AND COMPUTATIONAL APPROACHES TO THE PHARMACOKINETIC PROFILE OF PIROXICAM AND ITS SENSITIVE ASSAY IN RABBIT PLASMA TAVŞAN PLAZMASINDA PİROKSİKAMİN FARMAKOKİNETİK PROFİLİNE VE HASSAS ANALİZİNE YÖNELİK KROMATOGRAFİK VE HESAPLAMALI YAKLAŞIMLAR

AKSOY O. A., Taskin-Tok T., Cotaoglu M. Z., KARADAŞ BAKIRHAN N., KOÇAK E., Göksel B. A., et al.

Ankara Universitesi Eczacilik Fakultesi Dergisi , cilt.50, sa.2, ss.350-361, 2026 (Scopus, TRDizin)

6. Comprehensive Proteomic and Metabolomic Analysis of Novel Substituted Fluoroquinolone Derivatives in Escherichia coli Isolates

NİGİZ Ş., KULABAŞ N., TÜRE A., Kablan S. E., KOÇAK E., ÖZKUL KOÇAK C., et al.

Biomedical Chromatography , cilt.40, sa.4, 2026 (SCI-Expanded, Scopus)

7. Mass Spectrometry-Based Integrated Multiomics Platforms for Medicinal Plant Analysis

EYLEM C. C., ERDOĞAN KABLAN S., REÇBER T., KOÇAK E., NEMUTLU E.

Current Protocols , cilt.6, sa.2, 2026 (ESCI, Scopus)

8. Non-targeted metabolomic profiling of Cistus species and association with anticholinesterase efficacy for Alzheimer’s disease: In vitro and in silico evaluation

KAHRAMAN Ç., Gönülalan E. M., KOÇAK E., Şen Gökmen F., GÜNDÜZ M. G., NEMUTLU E., et al.

Journal of Ethnopharmacology , cilt.355, 2026 (SCI-Expanded, Scopus)

9. Targeted hepatic delivery of ezetimibe via red blood cell-coated nanoparticles for the treatment of non-alcoholic fatty liver disease through inflammation modulation

EŞİM Ö., ADATEPE Ş., AKSOY O. A., Goksel B. A., Yilmaz T., BAYKAL B., et al.

International Journal of Pharmaceutics , cilt.685, 2025 (SCI-Expanded, Scopus)

10. Metabolomic Profiling, Box–Behnken Design-Based Optimization of Ultrasonic Extraction, and Skin Anti-Aging Potential of the Green Husk of Juglans regia L. as a Sustainable Natural Waste

ŞENER S. Ö., Shaha S., Barazandeh S. S., Şen Ö., KOÇAK E., SUBAŞ T., et al.

Molecules , cilt.30, sa.21, 2025 (SCI-Expanded, Scopus)

11. Comparative effects of probiotic and postbiotic in ovo administration on broiler intestinal development and health

ÖZGENÇ ÇINAR Ö., Ekim B., ÇALIK A., ÖZKUL KOÇAK C., KOÇAK E., CEYLAN A.

Research in Veterinary Science , cilt.196, 2025 (SCI-Expanded, Scopus)

12. Integrative Multi-Omics Approach in Human Colon Adenocarcinoma Cell Line: Identification of Phenotypic Changes Observed in Cisplatin and 5-Fluorouracil Resistance

Özen G., EYLEM C. C., Baysal İ., KOÇAK E., Yabanoglu-Ciftci S., Kır S., et al.

Microchemical Journal , cilt.212, 2025 (SCI-Expanded, Scopus)

13. Metabolomic profiles altered by erlotinib encapsulated in poly(lactide-co-glycolide) nanoparticles in non-small cell lung cancer

YÜCEL Ç., EŞİM Ö., KARADAŞ BAKIRHAN N., ERDOĞAN KABLAN S., KOÇAK E., ERTUĞRUL M. S., et al.

Drug Development and Industrial Pharmacy , cilt.51, sa.5, ss.467-476, 2025 (SCI-Expanded, Scopus)

14. The potential role of hot flashes treatment strategies and regorafenib combinations in breast cancer therapy via co-drug loaded polymeric nanoparticles

EŞİM Ö., ADATEPE Ş., Sarper M., KARADAŞ BAKIRHAN N., ERDOĞAN KABLAN S., KOÇAK E., et al.

Journal of Drug Delivery Science and Technology , cilt.98, 2024 (SCI-Expanded, Scopus)

15. Development of a low allergenic product for patients with milk allergy and assessment of its specific IgE reactivity

Yazici D., Suer H., Bulbuloglu C. N., Guzar E., KOÇAK E., NEMUTLU E., et al.

Pediatric Allergy and Immunology , cilt.35, sa.6, 2024 (SCI-Expanded, Scopus)

16. Metabolomic Profiling and Biological Activities of Cell-Free Supernatants of Bacillus sp. Isolates: Antibacterial, Antibiofilm, and Anti-quorum Sensing Activities

Benli Yardimci G., Gonulalan E. M., Baltaci Bozkurt N., NEMUTLU E., KOÇAK E., ERYILMAZ M.

Experimed , cilt.14, sa.3, ss.183-193, 2024 (ESCI, Scopus)

17. Electrochemical biosensors for rapid diagnosis of bacterial infections: Design, targets and applications in clinical setting

KOÇAK E., ÖZKUL KOÇAK C., BOZAL PALABIYIK B., SÜSLÜ İ., USLU B.

Electroanalysis , cilt.35, sa.11, 2023 (SCI-Expanded, Scopus)

18. Bioactive and chemically defined hydrogels with tunable stiffness guide cerebral organoid formation and modulate multi-omics plasticity in cerebral organoids

Isik M., Okesola B. O., EYLEM C. C., KOÇAK E., NEMUTLU E., D'Este M., et al.

Acta Biomaterialia , cilt.171, ss.223-238, 2023 (SCI-Expanded, Scopus)

19. Machine Learning Analysis of RNA-seq Data for Diagnostic and Prognostic Prediction of Colon Cancer

BOSTANCI G. E., KOÇAK E., ÜNAL M., GÜZEL M. S., AÇICI K., Asuroglu T.

Sensors , cilt.23, sa.6, 2023 (SCI-Expanded, Scopus)

20. Metabolomics analysis insight into medicinal plant science

Waris M., KOÇAK E., Gonulalan E. M., Demirezer L. O., Kır S., NEMUTLU E.

TrAC - Trends in Analytical Chemistry , cilt.157, 2022 (SCI-Expanded, Scopus)

21. Tuning the Cell-Adhesive Properties of Two-Component Hybrid Hydrogels to Modulate Cancer Cell Behavior, Metastasis, and Death Pathways

Isik M., Okesola B. O., EYLEM C. C., KOÇAK E., NEMUTLU E., EMREGÜL E., et al.

Biomacromolecules , cilt.23, sa.10, ss.4254-4267, 2022 (SCI-Expanded, Scopus)

22. Exometabolomic analysis of susceptible and multi-drug resistant Pseudomonas aeruginosa

KOÇAK E., NİGİZ Ş., Özkan E., ERDOĞAN KABLAN S., HAZIROLAN G., NEMUTLU E., et al.

Letters in Applied Microbiology , cilt.75, sa.2, ss.234-242, 2022 (SCI-Expanded, Scopus)

23. Integrative proteomics and metabolomics approach to elucidate the antimicrobial effect of simvastatin on Escherichia coli

KOÇAK E., NEMUTLU E., Kır S., SAĞIROĞLU M., ÖZKUL KOÇAK C.

Biomedical Chromatography , cilt.35, sa.10, 2021 (SCI-Expanded, Scopus)

24. GC-MS-based metabolic profiling of Escherichia coli exposed to subinhibitory concentration of enoxacin Enoksasin subinhibitör konsantrasyonu maruziyeti altında Escherichia coli'nin GC-MS bazlı metabolomik profillemesi

KOÇAK E., ÖZKUL KOÇAK C.

Turk Hijyen ve Deneysel Biyoloji Dergisi , cilt.78, sa.3, ss.307-316, 2021 (Scopus, TRDizin)

25. Screening the antimicrobial effect of ferrocene-boronic acid on pseudomonas aeruginosa using proteomics and metabolomics approach

KOÇAK E., ÖZKUL KOÇAK C., TAŞKOR ÖNEL G., NEMUTLU E., Kir S., SAĞIROĞLU M.

Journal of Research in Pharmacy , cilt.24, sa.6, ss.812-820, 2020 (ESCI, Scopus, TRDizin)